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Genomics/Bioinformatics Intern

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Labcorp

11d ago

  • Internship
    Full-time
    Off-cycle Internship
  • Data
    Research & Development
  • San Diego
  • 5d left

AI generated summary

  • You should be pursuing a relevant degree, have skills in genomics, machine learning, Python or R, cloud tech, and be able to collaborate effectively with diverse teams.
  • You will analyze SARS-CoV-2 genomes, develop NGS pipelines, evaluate CNV tools, mine data for disease prediction, and create integrated bioinformatics workflows.

Requirements

  • Pursuing a BS, MS, or Ph.D. degree in computer science, bioinformatics or related discipline
  • Enjoy solving problems; inquisitive and analytical; engaged and motivated
  • Able to work both independently and as part of a larger team
  • Ability to see the big picture and work towards that goal
  • Basic understanding of genomics and biology
  • Familiarity with genomics related files and formats such as fastq file, a BAM file and a VCF file
  • Experience in artificial intelligence and statistical learning
  • Experience with statistical methodologies and machine learning techniques such as: neural networks, graphical models, ensemble methods and natural language processing
  • Experience with multiple deep learning techniques such as CNN, LSTM, RNN, etc., in addition to standard machine learning approaches such as those found in scikit-learn.
  • Master of evaluation techniques for supervised and unsupervised techniques. Knows to evaluate the quality of data and determine gaps in data or assumptions.
  • Proficiency with Python or R. Can develop meaningful python code using objective oriented programming and functional programming. Writes tests for code. Can debug errors quickly.
  • Strong data visualization skills.
  • Familiarity with one or more machine learning libraries or frameworks such as: PyTorch, Tensorflow.
  • Experience with rational and non-structure databases is highly desirable.
  • Experience using cloud technologies such as AWS with tools such as S3, EC2, Lambda, Athena, etc.
  • Demonstrated success in technical proficiency, scientific creativity, collaboration with others and independent thought.
  • Ability to collaborate with the team and translate existing research into practical solutions and products ability to build and manage relationships with various collaborators across and outside the company.
  • Comfortable working with both technical and non-technical staff to translate concepts and algorithms into working prototypes.
  • Drive project execution and implement a robust plan for measuring success
  • Lead discussions with senior leadership at the department or functional level

Responsibilities

  • Analysis of SARS-Cov-2 viral genomes samples from all over the USA to get insights into the spread of the pandemic
  • Research and develop next generation sequencing (NGS) analysis for Labcorp’s existing and novel laboratory tests. Typical projects would include developing pipeline to integrate the role of non-coding variants in disease or develop new Human Leukocytes Antigen (HLA) allele typing pipelines for transplant samples
  • Research and Development of Labcorp’s microbiome offerings, particularly, bioinformatics analysis pipeline
  • Copy Number Variation (CNV) Algorithm Bakeoff Project: Evaluate the performance of these tools to identify the best one to incorporate into the genetic tests offered by Labcorp
  • Data mining and predictive modeling of diseases using the laboratory test data on over half the US population
  • Using machine learning and AI to develop disease prediction models for various common and rare disease such as CKD and asthma
  • Application of novel genomics and bioinformatics tools to better characterize the Human Leukocytes Antigen (HLA) alleles and apply it to improve survival rates in transplantation.
  • Hybrid On-Premise-Cloud Bioinformatics Workflow: Develop a workflow that seamlessly integrates the results of analysis carried out in the cloud with those generated in-house

FAQs

What is the duration of the internship?

The duration of the internship is typically aligned with academic schedules, but specific timelines should be confirmed with the Center of Excellence.

What kind of projects will interns be working on?

Interns will work on various bioinformatics projects, including analysis of viral genomes, next-generation sequencing (NGS) development, microbiome offerings, and machine learning model development for disease predictions.

What educational qualifications are required for the internship?

Candidates should be pursuing a BS, MS, or Ph.D. degree in computer science, bioinformatics, or a related discipline.

Are there any specific technical skills required for this internship?

Yes, candidates should have proficiency in Python or R, experience with machine learning techniques, familiarity with genomics-related files, and a strong understanding of statistical methodologies.

Is there any experience required in cloud technologies?

Familiarity with cloud technologies such as AWS, including tools like S3, EC2, Lambda, and Athena, is highly desirable.

How are interns supported during their projects?

Interns will receive guidance from CoE members and have the opportunity to collaborate and learn from the team.

Is there a possibility of working remotely during the internship?

Yes, remote participation in the internship is possible, with a hybrid work format also available.

What is the pay range for this internship?

The pay range for the internship is $30-$40 per hour, depending on the candidate's skills and prior relevant experience.

When does the application window close?

The application window will close on November 15, 2024.

What benefits are available to interns?

While this position is an internship, regular, full-time, or part-time employees working 20 or more hours per week are eligible for comprehensive benefits, including medical, dental, vision, life insurance, and more.

What qualities are valued in candidates for this internship?

Ideal candidates should be problem solvers, inquisitive, analytical, and able to work both independently and as part of a larger team, with strong data visualization skills and the ability to communicate complex concepts clearly.

Are there opportunities for full-time positions after the internship?

Yes, interns from previous years have successfully transitioned into industry positions in computation/bioinformatics analysis or pursued advanced education in the field.

In Pursuit of Answers

Science & Healthcare
Industry
10,001+
Employees
1978
Founded Year

Mission & Purpose

Clear and confident health care decisions begin with questions. At Labcorp, we’re constantly in pursuit of answers. With unparalleled diagnostics and drug development capabilities, we accelerate innovation and provide insight to improve health and improve lives. Whether you’re a patient, provider, researcher or in the pharmaceutical industry, we’re here for you. More than 70,000 employees strong, we serve clients in more than 100 countries. Labcorp (NYSE: LH) reported revenue of $14 billion in FY 2020.